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Want to know functionally important regions of your Protein? | |||
| DynFunc | Bhadra and Pal (2014) Proteins 82, 2443-2454. [link] | ||
Protein function | |||
| ProKnow (@UCLA) | Pal and Eisenberg (2005) Structure 13, 121-130. [link] | ||
Puzzling out protein quaternary structure | |||
| IPAC | Mitra and Pal (2011) Structure 19, 304-312. [link] | ||
| COMPACT | Mitra and Pal (2011) Structure 19, 304-312. [link] | ||
Protein-protein docking | |||
| PROBE | Mitra and Pal (2011) Journal of Computational Chemistry 32, 787-796. [link] | ||
| PRUNE | Mitra and Pal (2011) Nucleic Acids Res. 39 W229-W234. [link] | ||
DATABASE SERVICES
| Intrinsic terminators of transcription | |||
| WebGeSTer | Mitra, Kesarwani, Pal, and Nagaraja (2011) Nucleic Acids Res. 39, D129-D135. [link] | ||
Protein-protein docking decoys | |||
| dockYard | Mitra and Pal (2011) Journal of Molecular Modeling 17, 599-606.[link] | ||
SOFTWARES
| Identifying metabolites in NMR based metabolomics | |||
| PROMEB | Abhinav Dubey, Annapoorni Rangarajan, Debnath Pal and Hanudatta Sastry Atreya (2015) Analytical Chemistry 87, 12197-12205. [link] | ||
| Chemical Shifts to Metabolic Pathways | |||
| ChemSMP | Abhinav Dubey, Annapoorni Rangarajan, Debnath Pal and Hanudatta Sastry Atreya (2015) Analytical Chemistry 87, 7148-7155. [link] | ||
Coarse grained force field for protein simulations | |||
| CGMM | Bhadra and Pal (2017) Comput. Biol. Med. 83 134-142. [link] | ||
Packing and complementarity at protein contacts | |||
| NIP-NSc | Mitra and Pal (2010) FEBS Letters 584, 1163-1168. [link] | ||